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See for the most recent installation instructions and further information. 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anthro (>= 1.0.0) Suggests: testthat (>= 3.0.0), survey NeedsCompilation: no License: GPL (>= 3) Package: AnthropMMD Version: 4.0.3 Depends: R (>= 4.1.0) Imports: dplyr, MASS, plotrix, rlang, scatterplot3d, shiny, smacof Suggests: cluster, covr, knitr, rmarkdown, testthat (>= 2.1.0) NeedsCompilation: no License: CeCILL-2 | file LICENSE Package: Anthropometry Version: 1.19 Depends: R (>= 3.3.0) Imports: shapes, rgl, archetypes, nnls, ddalpha, FNN, ICGE, cluster, biclust Suggests: knitr, calibrate, mvtnorm, RColorBrewer, plotrix, abind NeedsCompilation: yes License: GPL (>= 2) Package: AntibodyTiters Version: 0.1.24 Depends: openxlsx (>= 4.2.4), R (>= 3.3.0), DescTools (>= 0.99.43) NeedsCompilation: no License: GPL-3 Package: anticlust Version: 0.8.5 Depends: R (>= 3.6.0) Imports: Matrix, RANN (>= 2.6.0) Suggests: knitr, palmerpenguins, Rglpk, rmarkdown, Rsymphony, tinytest NeedsCompilation: yes License: MIT + file LICENSE SystemRequirements: The exact (anti)clustering algorithms require that either the GNU linear programming kit (GLPK library) is installed () or the SYMPHONY open source MILP solver (). Rendering the vignette requires pandoc (). 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loo, dplyr, tidyr, purrr, tibble, tidyselect, evaluate, rlang, chk (>= 0.7.0) Suggests: rstan, knitr, rmarkdown, testthat (>= 3.0.0) NeedsCompilation: no License: GPL-2 Package: BayesNetBP Version: 1.6.1 Depends: R (>= 3.6.0), stats, utils Imports: igraph, RColorBrewer, fields, doBy, methods, graph, bnlearn, graphics Suggests: Rgraphviz, shiny, googleVis, cyjShiny, qtl, qtlnet NeedsCompilation: no License: GPL (>= 2) Package: BayesNSGP Version: 0.1.2 Depends: R (>= 3.4.0),nimble Imports: FNN,Matrix,methods,StatMatch NeedsCompilation: no License: GPL-3 Package: BayesOrdDesign Version: 0.1.2 Depends: R (>= 3.3.0) Imports: ordinal, schoolmath, coda, gsDesign, superdiag, ggplot2, madness, rjmcmc, R2jags, rjags, methods, Suggests: testthat (>= 3.0.0) NeedsCompilation: no License: GPL-2 Package: BayesPieceHazSelect Version: 1.1.0 Depends: mvtnorm NeedsCompilation: no License: GPL-2 Package: bayesplay Version: 0.9.3 Imports: methods, gginnards, stats Suggests: testthat, covr, knitr, 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(http://mcmc-jags.sourceforge.net) Package: BHMSMAfMRI Version: 2.2 Imports: Rcpp (>= 1.0.9), oro.nifti, wavethresh LinkingTo: Rcpp, RcppArmadillo Suggests: knitr, rmarkdown, bookdown NeedsCompilation: yes License: GPL (>= 2) Package: bhpm Version: 1.7 Depends: coda NeedsCompilation: yes License: GPL (>= 2) Package: BHSBVAR Version: 3.1.1 Depends: R (>= 3.5.0) Imports: Rcpp (>= 1.0.6) LinkingTo: Rcpp, RcppArmadillo Suggests: rmarkdown, knitr NeedsCompilation: yes License: GPL (>= 3) Package: BI Version: 1.2.0 NeedsCompilation: no License: GPL-3 Package: BiasCorrector Version: 0.2.2 Depends: R (>= 2.10) Imports: data.table, DT, magrittr, rBiasCorrection (>= 0.3.4), shiny, shinydashboard, shinyjs Suggests: lintr, testthat NeedsCompilation: no License: GPL-3 Package: BiasedUrn Version: 2.0.12 NeedsCompilation: yes License: GPL-3 Package: bib2df Version: 1.1.2.0 Imports: dplyr, stringr, humaniformat, httr Suggests: testthat, knitr, rmarkdown, ggplot2, tidyr NeedsCompilation: no License: GPL-3 Package: BiBitR Version: 0.3.1 Imports: stats,foreign,methods,utils,viridis,cluster,dendextend,lattice,grDevices,graphics,randomcoloR,biclust NeedsCompilation: no License: GPL-3 SystemRequirements: Java Package: biblio Version: 0.0.10 Depends: R(>= 4.1) Imports: methods, rcrossref, stringr, tools, utils, yamlme Suggests: covr, devtools, rmarkdown, testthat NeedsCompilation: no License: GPL (>= 2) SystemRequirements: pandoc (>= 1.14) - http://pandoc.org Package: bibliometrix Version: 4.3.0 Depends: R (>= 3.3.0) Imports: stats, grDevices, bibliometrixData, dimensionsR, dplyr, DT, ca, forcats, ggplot2, ggrepel, igraph, Matrix, plotly, openalexR, openxlsx, pubmedR, readr, readxl, rscopus, shiny, SnowballC, stringdist, stringi, tidyr, tidytext Suggests: knitr, rmarkdown, testthat (>= 3.0.0), shinycssloaders, visNetwork, wordcloud2 NeedsCompilation: no License: GPL-3 Package: bibliometrixData Version: 0.3.0 Depends: R (>= 3.3.0) Suggests: bibliometrix NeedsCompilation: no License: MIT 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NeedsCompilation: no License: MIT + file LICENSE Package: biClassify Version: 1.3 Depends: R (>= 2.10) Imports: Rcpp (>= 1.0.1), Matrix, stats, fields, MASS, datasets, mvtnorm, expm, DAAG LinkingTo: Rcpp, RcppArmadillo Suggests: testthat, knitr, rmarkdown NeedsCompilation: yes License: GPL-3 Package: biclust Version: 2.0.3.1 Depends: R (>= 2.10), MASS, grid, colorspace, lattice Imports: methods, flexclust, additivityTests, tidyr, ggplot2 Suggests: isa2 NeedsCompilation: yes License: GPL-3 Package: biclustermd Version: 0.2.3 Depends: ggplot2 (>= 3.0.0), R (>= 3.5.0), tidyr (>= 0.8.1) Imports: biclust (>= 2.0.1), doParallel (>= 1.0.14), dplyr (>= 0.7.6), foreach (>= 1.4.4), magrittr (>= 1.5), nycflights13 (>= 1.0.0), phyclust (>= 0.1-24) Suggests: knitr, rmarkdown, testthat NeedsCompilation: no License: MIT + file LICENSE Package: BICORN Version: 0.1.0 Depends: R (>= 3.4) Imports: stats Suggests: knitr, rmarkdown NeedsCompilation: no License: GPL-2 Package: BiDAG Version: 2.1.4 Depends: R (>= 3.5.0) Imports: Rcpp (>= 0.12.7), methods, graph, Rgraphviz, RBGL, pcalg, graphics, Matrix, coda LinkingTo: Rcpp NeedsCompilation: yes License: GPL (>= 2) Package: bidask Version: 2.0.4 Imports: xts, zoo Suggests: dplyr, crypto2, quantmod, testthat (>= 3.0.0) NeedsCompilation: no License: GPL-3 Package: BiDimRegression Version: 2.0.1 Depends: R (>= 4.1.0) Imports: Formula, methods Suggests: testthat, knitr, rmarkdown, dplyr, ggplot2 NeedsCompilation: no License: GPL-3 Package: BIEN Version: 1.2.6 Depends: R (>= 3.2.1), RPostgreSQL Imports: DBI, ape, sf, fasterize, raster, terra, doParallel, parallel, foreach Suggests: knitr, rmarkdown, testthat, maps NeedsCompilation: no License: MIT + file LICENSE Package: BifactorIndicesCalculator Version: 0.2.2 Depends: R (>= 3.5) Imports: tidyr, lavaan, mirt, MplusAutomation, mnormt Suggests: testthat (>= 2.1.0), psych NeedsCompilation: no License: GPL (>= 3) Package: bife Version: 0.7.2 Depends: R (>= 3.1.0) Imports: data.table, Formula, Rcpp, stats LinkingTo: Rcpp, RcppArmadillo Suggests: alpaca, knitr, rmarkdown NeedsCompilation: yes License: GPL (>= 2) Package: BIFIEsurvey Version: 3.6-6 Depends: R (>= 3.1) Imports: methods, miceadds, Rcpp, stats, utils LinkingTo: Rcpp, RcppArmadillo Suggests: graphics, grDevices, lavaan, mitools, survey, TAM Enhances: Hmisc, intsvy, LSAmitR NeedsCompilation: yes License: GPL (>= 2) Package: bifurcatingr Version: 2.1.0 Depends: R (>= 4.0), fMultivar (>= 4021.83) Suggests: graphics, igraph, MASS, stats, knitr, rmarkdown NeedsCompilation: no License: AGPL (>= 3) Package: bigalgebra Version: 1.1.1 Depends: bigmemory (>= 4.0.0) Imports: methods LinkingTo: bigmemory, BH, Rcpp NeedsCompilation: yes License: LGPL-3 | Apache License 2.0 Package: biganalytics Version: 1.1.22 Depends: stats, utils, bigmemory (>= 4.0.0), foreach, biglm, methods LinkingTo: Rcpp, bigmemory, BH NeedsCompilation: yes License: LGPL-3 | Apache License 2.0 Package: bigassertr Version: 0.1.6 Suggests: testthat, covr NeedsCompilation: no License: GPL-3 Package: bigBits Version: 1.3 Imports: Rmpfr, gmp, methods NeedsCompilation: no License: LGPL-3 Package: bigchess Version: 1.9.1 Imports: processx Suggests: ff,ffbase,RSQLite,rjson,magrittr NeedsCompilation: no License: GPL-3 Package: bigD Version: 0.2.0 Depends: R (>= 3.2.0) Suggests: covr, testthat (>= 3.0.0) NeedsCompilation: no License: MIT + file LICENSE Package: bigdatadist Version: 1.1 Depends: R (>= 3.4.0) Imports: MASS, FNN, rrcov, pdist NeedsCompilation: yes License: GPL (>= 3) Package: BIGDAWG Version: 3.0.3 Depends: R (>= 3.5.0) Imports: XML, httr, haplo.stats, parallel Suggests: knitr, rmarkdown NeedsCompilation: no License: GPL (>= 3) Package: bigDM Version: 0.5.4 Depends: R (>= 4.0.0) Imports: crayon, doParallel, fastDummies, foreach, future, future.apply, geos, MASS, Matrix, methods, parallel, RColorBrewer, Rdpack, sf, spatialreg, spdep, stats, utils, rlist Suggests: bookdown, INLA (>= 22.12.16), knitr, rmarkdown, testthat (>= 3.0.0), tmap NeedsCompilation: no License: GPL-3 Package: bigergm Version: 1.2.1 Depends: R (>= 3.5.0), ergm (>= 4.5.0), Rcpp Imports: RcppArmadillo (>= 0.10.5), network (>= 1.16.0), Matrix, cachem, tidyr, statnet.common, methods, stringr, intergraph, igraph, parallel, magrittr, purrr, dplyr, glue, readr, foreach, rlang, memoise, reticulate, ergm.multi LinkingTo: Rcpp, RcppArmadillo (>= 0.10.5) Suggests: rmarkdown, knitr, testthat, sna, tibble NeedsCompilation: yes License: GPL-3 Package: bigGP Version: 0.1.8 Depends: R (>= 3.0.0), Rmpi (>= 0.6-2), methods Suggests: rlecuyer, fields NeedsCompilation: yes OS_type: unix License: GPL (>= 2) SystemRequirements: OpenMPI or MPICH2 Package: BIGL Version: 1.9.3 Depends: R (>= 3.5) Imports: ggplot2, MASS, methods, minpack.lm, numDeriv, parallel, progress, plotly, robustbase, scales, nleqslv, data.table, lifecycle, htmlwidgets, magrittr Suggests: knitr, rmarkdown, testthat, shiny, DT NeedsCompilation: no License: GPL-3 Package: biglasso Version: 1.6.0 Depends: R (>= 3.2.0), bigmemory (>= 4.5.0), Matrix, ncvreg Imports: Rcpp (>= 0.12.1), methods LinkingTo: Rcpp, RcppArmadillo (>= 0.8.600), bigmemory, BH Suggests: parallel, testthat, glmnet, survival, knitr, rmarkdown NeedsCompilation: yes License: GPL-3 Package: bigleaf Version: 0.8.2 Depends: R (>= 2.10) Imports: robustbase, solartime Suggests: knitr, rmarkdown, testthat NeedsCompilation: no License: GPL (>= 2) Package: biglm Version: 0.9-3 Depends: DBI, methods Suggests: RSQLite, RODBC Enhances: leaps NeedsCompilation: yes License: GPL Package: bigMap Version: 2.3.1 Depends: R (>= 3.5.0) Imports: Rcpp (>= 0.12.0), bigmemory (>= 4.5.0), parallel (>= 3.5.0), RColorBrewer, colorspace, LinkingTo: Rcpp, RcppArmadillo, BH, bigmemory Suggests: knitr, rmarkdown NeedsCompilation: yes License: GPL-3 SystemRequirements: GNU make Package: bigmatch Version: 0.6.4 Imports: rcbalance, stats, liqueueR, plyr, mvnfast, methods Suggests: optmatch, rrelaxiv NeedsCompilation: no License: MIT + file LICENSE Package: bigmds Version: 3.0.0 Depends: R (>= 3.0.2) Imports: pracma, svd, corpcor, parallel, stats Suggests: testthat NeedsCompilation: no License: MIT + file LICENSE Package: bigmemory Version: 4.6.4 Depends: R (>= 3.2.0), Imports: bigmemory.sri, methods, utils, Rcpp, uuid (>= 1.0-2) LinkingTo: BH, uuid (>= 1.0-2), Rcpp Suggests: testthat, remotes Enhances: biganalytics, bigtabulate NeedsCompilation: yes License: LGPL-3 | Apache License 2.0 Package: bigmemory.sri Version: 0.1.8 Imports: methods Enhances: bigmemory NeedsCompilation: no License: LGPL-3 | Apache License 2.0 Package: bignum Version: 0.3.2 Depends: R (>= 3.3.0) Imports: rlang, vctrs (>= 0.3.0) LinkingTo: BH, cpp11 Suggests: knitr, pillar (>= 1.6.3), rmarkdown, testthat NeedsCompilation: yes License: MIT + file LICENSE Package: bigparallelr Version: 0.3.2 Depends: foreach Imports: bigassertr (>= 0.1.1), doParallel, flock, parallel, parallelly, RhpcBLASctl Suggests: testthat, covr NeedsCompilation: no License: GPL-3 Package: bigQF Version: 1.6 Depends: R (>= 2.10), methods Imports: svd, CompQuadForm, Matrix, stats, coxme Suggests: knitr, rmarkdown, SKAT NeedsCompilation: yes License: GPL-2 Package: BigQuic Version: 1.1-13 Depends: R (>= 3.2.2), methods Imports: Rcpp (>= 0.12.1), Matrix, scalreg LinkingTo: Rcpp NeedsCompilation: yes License: GPL (>= 3) | file LICENSE Package: bigreadr Version: 0.2.5 Imports: bigassertr (>= 0.1.1), data.table, parallelly, Rcpp, utils LinkingTo: Rcpp Suggests: spelling, testthat, covr, RSQLite NeedsCompilation: yes License: GPL-3 Package: bigReg Version: 0.1.5 Depends: R (>= 3.2.0), Rcpp (>= 1.0.11), parallel, methods, stats, uuid (>= 0.1-2), MASS (>= 7.3-39) LinkingTo: Rcpp, RcppArmadillo (>= 0.5.200.1.0) NeedsCompilation: yes OS_type: unix License: GPL (>= 2) Package: bigrquery Version: 1.5.1 Depends: R (>= 3.6) Imports: bit64, brio, cli, clock, curl, DBI, gargle (>= 1.5.0), httr, jsonlite, lifecycle, methods, prettyunits, rlang (>= 1.1.0), tibble LinkingTo: cli, cpp11, rapidjsonr Suggests: blob, covr, dbplyr (>= 2.4.0), dplyr (>= 1.1.0), hms, readr, sodium, testthat (>= 3.1.5), wk (>= 0.3.2), withr NeedsCompilation: yes License: MIT + file LICENSE Package: bigrquerystorage Version: 1.1.0 Imports: arrow, methods, rlang, DBI, bigrquery, assertthat, Rcpp, lifecycle, bit64, tibble LinkingTo: Rcpp Suggests: testthat, hms, wk, tzdb, base64enc NeedsCompilation: yes License: Apache License (>= 2) SystemRequirements: grpc/protobuf headers and compilers. For example libprotobuf-dev libgrpc++-dev protobuf-compiler-grpc (Debian) or protobuf-devel grpc-devel grpc-plugins (Fedora/RHEL) Package: bigsimr Version: 0.12.0 Depends: R (>= 3.6.0) Imports: JuliaCall Suggests: testthat (>= 3.0.0) NeedsCompilation: no License: GPL-3 SystemRequirements: Julia (>= 1.7), Bigsimr.jl, Distributions.jl Package: bigsnpr Version: 1.12.2 Depends: R (>= 3.4), bigstatsr (>= 1.5.11) Imports: bigassertr (>= 0.1.6), bigparallelr, bigsparser (>= 0.6), bigreadr, bigutilsr (>= 0.3.3), data.table (>= 1.12.4), doRNG, foreach, ggplot2, magrittr, Matrix (>= 1.3.0), methods, Rcpp, runonce (>= 0.2.3), stats, vctrs LinkingTo: bigsparser, bigstatsr, Rcpp, RcppArmadillo (>= 0.9.600), rmio, roptim (>= 0.1.6) Suggests: bindata, covr, dbplyr (>= 1.4), dplyr, gaston, glue, Hmisc, microbenchmark, pcadapt (>= 4.1), quadprog, RhpcBLASctl, rmutil, RSpectra, RSQLite, R.utils, spelling, testthat, tibble, xgboost NeedsCompilation: yes License: GPL-3 SystemRequirements: C++11. Also a few functions from package 'bigsnpr' wrap existing software such as 'PLINK' . Functions are provided to download these software. Note that these external software might not work for some operating systems (e.g. 'PLINK' might not work on Solaris). Package: bigsparser Version: 0.7.1 Depends: R (>= 3.1) Imports: Rcpp, bigassertr, methods, Matrix, rmio (>= 0.4) LinkingTo: Rcpp, RcppEigen, rmio Suggests: testthat (>= 2.1.0) NeedsCompilation: yes License: GPL-3 Package: bigsplines Version: 1.1-1 Depends: quadprog Imports: stats, graphics, grDevices NeedsCompilation: yes License: GPL (>= 2) Package: bigstatsr Version: 1.5.12 Depends: R (>= 3.4) Imports: bigassertr (>= 0.1.1), bigparallelr (>= 0.2.3), cowplot, foreach, ggplot2 (>= 3.0), graphics, methods, ps (>= 1.4), Rcpp, rmio (>= 0.4), RSpectra, stats, tibble, utils LinkingTo: Rcpp, RcppArmadillo, rmio Suggests: bigmemory (>= 4.5.33), bigreadr (>= 0.2), covr, data.table, dplyr, glmnet, hexbin, memuse, ModelMetrics, plotly, ppcor, RhpcBLASctl, spelling (>= 1.2), testthat NeedsCompilation: yes License: GPL-3 Package: bigstep Version: 1.1.1 Depends: R (>= 3.5.0) Imports: bigmemory, magrittr, matrixStats, R.utils, RcppEigen, speedglm, stats, utils Suggests: devtools, knitr, rmarkdown, testthat NeedsCompilation: no License: GPL-3 Package: bigSurvSGD Version: 0.0.1 Depends: foreach, parallel, R (>= 3.5.0) Imports: Rcpp (>= 1.0.4), bigmemory, doParallel, survival LinkingTo: Rcpp NeedsCompilation: yes License: GPL (>= 2) Package: bigtabulate Version: 1.1.9 Depends: bigmemory (>= 4.0.0), biganalytics LinkingTo: Rcpp, BH, bigmemory NeedsCompilation: yes License: LGPL-3 | Apache License 2.0 Package: bigtcr Version: 1.1 Depends: R (>= 3.4) NeedsCompilation: yes License: GPL (>= 3) Package: bigtime Version: 0.2.3 Depends: R (>= 3.6.0), methods Imports: Rcpp (>= 1.0.7), stats, utils, grDevices, graphics, corrplot, dplyr, ggplot2, tidyr, magrittr LinkingTo: Rcpp, RcppArmadillo, RcppEigen NeedsCompilation: yes License: GPL (>= 2) Package: bigutilsr Version: 0.3.4 Imports: bigassertr (>= 0.1.1), bigparallelr (>= 0.2.3), nabor, Rcpp, robustbase, RSpectra, stats LinkingTo: Rcpp Suggests: covr, Gmedian, mvtnorm, rrcov, spelling, testthat (>= 2.1.0) NeedsCompilation: yes License: GPL-3 Package: BigVAR Version: 1.1.2 Depends: R (>= 3.5.0), methods, lattice Imports: MASS, zoo, Rcpp, stats, utils, grDevices, graphics, abind LinkingTo: Rcpp, RcppArmadillo, RcppEigen Suggests: knitr, rmarkdown, gridExtra, expm, MCS, quantmod, codetools NeedsCompilation: yes License: GPL (>= 2) SystemRequirements: C++11 Package: bikeshare14 Version: 0.1.4 Depends: R (>= 2.10) Suggests: data.table NeedsCompilation: no License: CC0 Package: bikm1 Version: 1.1.0 Imports: gtools, stats, graphics, grDevices, methods, parallel, ade4, pracma, ggplot2, reshape2, grid, lpSolve NeedsCompilation: no License: GPL-2 Package: bild Version: 1.2-1 Depends: R (>= 3.1.0), methods, stats, graphics, grDevices, utils NeedsCompilation: yes License: GPL (>= 2) Package: billboard Version: 0.1.0 Depends: R (>= 2.10) Imports: tibble Suggests: dplyr NeedsCompilation: no License: MIT + file LICENSE Package: billboarder Version: 0.4.1 Depends: R (>= 3.1.0) Imports: htmlwidgets, htmltools, magrittr, jsonlite, 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